On the nonequilibrium entropy of large and small systems

Thermodynamics makes definite predictions about the thermal behavior of macroscopic systems in and out of equilibrium. Statistical mechanics aims to derive this behavior from the dynamics and statistics of the atoms and molecules making up these systems. A key element in this derivation is the large number of microscopic degrees of freedom of macroscopic systems. Therefore, the extension of thermodynamic concepts, such as entropy, to small (nano) systems raises many questions. Here we shall reexamine various definitions of entropy for nonequilibrium systems, large and small. These include thermodynamic (hydrodynamic), Boltzmann, and Gibbs-Shannon entropies. We shall argue that, despite its common use, the last is not an appropriate physical entropy for such systems, either isolated or in contact with thermal reservoirs: physical entropies should depend on the microstate of the system, not on a subjective probability distribution. To square this point of view with experimental results of Bechhoefer we shall argue that the Gibbs-Shannon entropy of a nano particle in a thermal fluid should be interpreted as the Boltzmann entropy of a dilute gas of Brownian particles in the fluid

Day-night asymmetries of low-energy electrons in Saturn's inner magnetosphere

We examine the day-night asymmetry of near-equatorial low energy (12-100 eV) electron fluxes measured by Cassini from July 1, 2004 through April 1, 2010. This energy range is also known to be associated with interchange injections. The electrons are separated into field-aligned (0 degrees to 20 degrees and 160 degrees to 180 degrees) pitch angles and trapped (70 degrees to 110 degrees) pitch angles. There is a stronger day-night asymmetry for the trapped than the field-aligned electrons, but both show enhanced energy fluxes on the nightside relative to the dayside. The dayside electron fluxes decrease sharply at an L-shell of 8, while the nightside electrons exhibit a slow decline in to L = 5. Our finding, along with previous research of high energy electrons, shows that this asymmetry is energy independent. This suggests that interchange injections are stronger, and therefore penetrate deeper into the magnetosphere, on the nightside

Ion pickup observed at comet 67P with the Rosetta Plasma Consortium (RPC) particle sensors: similarities with previous observations and AMPTE releases, and effects of increasing activity

Rosetta’s unique trajectory is allowing exciting measurements of the development of cometary activity between ~3.6 and 1.2 AU for the first time. For a few months following Rosetta’s arrival at comet 67P in August 2014, data from the Rosetta Plasma Consortium (RPC) particle instruments (the Ion and Electron Spectrometer (IES) and the Ion Composition Analyser (ICA)), have shown that the low activity cometary environment was initially dominated by the solar wind. This was expected in the early stages of the mission. In addition to the solar wind and related He+ populations, a low energy pickup ion population is seen intermittently in the early phase of the mission near the comet. The population is very time dependent, but at times reaches higher energy approaching the solar wind energy. During these intervals, ICA data indicate that the composition is mainly water group ions. The rising energy signatures of these ions observed at times indicate that they are in the early phases of the pickup process, initially accelerated by the electric field (‘early phase pickup’). Here, we compare these exciting pickup ion measurements with Giotto measurements at the relatively weak (compared to Halley) comet Grigg-Skjellerup, where early phase pickup was seen including non-gyrotropic cometary ions, and with the AMPTE lithium and barium releases. Our results reveal some striking similarities with the AMPTE releases, particularly the rising energy signature related to early pickup, and a momentum balance between the pickup ions and the deflected solar wind. There is also evidence for momentum transfer between the pickup ions and the solar wind, with less velocity change seen in the solar wind alpha particles compared to the protons; this was also observed in an AMPTE lithium release. We discuss the effects of increasing activity observed between 3.6 to 1.8 AU, including the increasing dominance and energisation of pickup ions, increasing ionospheric effects and the decreasing effect of the solar wind

Magnetic signatures of plasma-depleted flux tubes in the Saturnian inner magnetosphere

Initial Cassini observations have revealed evidence for interchanging magnetic flux tubes in the inner Saturnian magnetosphere. Some of the reported flux tubes differ remarkably by their magnetic signatures, having a depressed or enhanced magnetic pressure relative to their surroundings. The ones with stronger fields have been interpreted previously as either outward moving mass-loaded or inward moving plasma-depleted flux tubes based on magnetometer observations only. We use detailed multi-instrumental observations of small and large density depletions in the inner Saturnian magnetosphere from Cassini Rev. A orbit that enable us to discriminate amongst the two previous and opposite interpretations. Our analysis undoubtedly confirms the similar nature of both types of reported interchanging magnetic flux tubes, which are plasma-depleted, whatever their magnetic signatures are. Their different magnetic signature is clearly an effect associated with latitude. These Saturnian plasma-depleted flux tubes ultimately may play a similar role as the Jovian ones

On the implications of aerosol liquid water and phase separation for modeled organic aerosol mass

Water is an important component of PM2.5 Many traditional SOA species are highly soluble and thus can be considered extractable Water can influence the partitioning of compounds traditionally considered insoluble in models Organic aerosol takes up water according to RH Organic aerosol interacts with inorganic water Deviations in ideality (solubility) must be considered

Wide variation in susceptibility of transmitted/founder HIV-1 subtype C Isolates to protease inhibitors and association with in vitro replication efficiency

© 2016 The Author(s).The gag gene is highly polymorphic across HIV-1 subtypes and contributes to susceptibility to protease inhibitors (PI), a critical class of antiretrovirals that will be used in up to 2 million individuals as second-line therapy in sub Saharan Africa by 2020. Given subtype C represents around half of all HIV-1 infections globally, we examined PI susceptibility in subtype C viruses from treatment-naïve individuals. PI susceptibility was measured in a single round infection assay of full-length, replication competent MJ4/gag chimeric viruses, encoding the gag gene and 142 nucleotides of pro derived from viruses in 20 patients in the Zambia-Emory HIV Research Project acute infection cohort. Ten-fold variation in susceptibility to PIs atazanavir and lopinavir was observed across 20 viruses, with EC50 s ranging 0.71-6.95 nM for atazanvir and 0.64-8.54 nM for lopinavir. Ten amino acid residues in Gag correlated with lopinavir EC50 (p < 0.01), of which 380 K and 389I showed modest impacts on in vitro drug susceptibility. Finally a significant relationship between drug susceptibility and replication capacity was observed for atazanavir and lopinavir but not darunavir. Our findings demonstrate large variation in susceptibility of PI-naïve subtype C viruses that appears to correlate with replication efficiency and could impact clinical outcomes

Remnant cholesterol predicts progression of diabetic nephropathy and retinopathy in type 1 diabetes

Background We aimed to assess whether remnant cholesterol concentration and variability predict the progression of diabetic nephropathy (DN) and severe diabetic retinopathy (SDR) in type 1 diabetes. Methods This observational prospective study covered 5150 FinnDiane Study participants. Remnant cholesterol was calculated as total cholesterol - LDL cholesterol - HDL cholesterol and variability as the coefficient of variation. DN category was based on consensus albuminuria reference limits and the progression status was confirmed from medical files. SDR was defined as retinal laser treatment. For 1338 individuals, the severity of diabetic retinopathy (DR) was graded using the ETDRS classification protocol. Median (IQR) follow-up time was 8.0 (4.9-13.7) years for DN and 14.3 (10.4-16.3) for SDR. Results Remnant cholesterol (mmol L-1) was higher with increasing baseline DN category (P < 0.001). A difference was also seen comparing non-progressors (0.41 [0.32-0.55]) with progressors (0.55 [0.40-0.85]), P < 0.001. In a Cox regression analysis, remnant cholesterol predicted DN progression, independently of diabetes duration, sex, HbA(1c), systolic blood pressure, smoking, BMI, estimated glucose disposal rate and estimated glomerular filtration rate (HR: 1.51 [1.27-1.79]). Remnant cholesterol was also higher in those who developed SDR (0.47 [0.36-0.66]) than those who did not (0.40 [0.32-0.53]), P < 0.001, and the concentration increased stepwise with increasing DR severity (P < 0.001). Regarding SDR, the HR for remnant cholesterol was 1.52 (1.26-1.83) with the most stringent adjustment. However, remnant cholesterol variability was not independently associated with the outcomes. Conclusions Remnant cholesterol concentration, but not variability, predicts DN progression and development of SDR. However, it remains to be elucidated whether the associations are causal or not.Peer reviewe